C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PAX3 and PAX7 binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022974 Paxbp1 10090 - 16:91014037-91044543 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023698 Paxbp1-002 91014916-91044164 nonsense_mediated_decay
  ENSMUST00000118522 Paxbp1-001 91014037-91044543 protein_coding
  ENSMUST00000124653 Paxbp1-004 91030449-91034892 retained_intron
  ENSMUST00000127002 Paxbp1-007 91031564-91044354 processed_transcript
  ENSMUST00000128922 Paxbp1-005 91025675-91027638 retained_intron
  ENSMUST00000145136 Paxbp1-008 91025556-91030514 nonsense_mediated_decay
  ENSMUST00000146281 Paxbp1-003 91024811-91030816 retained_intron
  ENSMUST00000150397 Paxbp1-006 91016849-91019231 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023698ENSMUST00000118522ENSMUST00000127002
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023698 N/A N/A 8.919±0.73 N/A 5.222±0.00 N/A 1.773±0.00 N/A 10.700±3.22 N/A 2.239±0.38 18.678±2.22 11.648±5.25 7.288±2.55
ENSMUST00000118522 3.885±0.12 5.403±1.72 3.775±0.00 13.603±0.00 4.849±1.63 5.943±1.64 2.131±0.41 2.469±0.47 5.477±5.08 6.765±1.49 1.014±0.19 8.264±3.15 5.483±0.63 5.586±0.60
ENSMUST00000127002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.704±0.00 N/A 38.547±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0002 VISTA 16:90804484-91407069
CIL_00087M CIL_00087M_0002 VISTA 16:90839145-91442270
CIL_0009BQ CIL_0009BQ_0002 VISTA 16:90840152-91441411
CIL_000089 CIL_000089_0002 CGP 16:90936092-91044543
CIL_0007UY CIL_0007UY_0002 VISTA 16:90990868-91593443
CIL_0003TV CIL_0003TV_0002 CGP 16:91014037-91095122

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 IEA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0007517 IEA muscle organ development
GO:0008134 IPI transcription factor binding
GO:0014842 IMP regulation of satellite cell proliferation
GO:0031062 IDA positive regulation of histone methylation
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:2000288 IMP positive regulation of myoblast proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062361 PAXBP1 PAX3 and PAX7 binding protein 1 protein_coding Danio_rerio
ENSG00000159086 PAXBP1 PAX3 and PAX7 binding protein 1 protein_coding Homo_sapiens

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