C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Rho guanine nucleotide exchange factor (GEF) 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146781 Arhgef39-005 ENSMUSG00000051517 10090 - 4:43497732-43499611 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleOvaryPlacentaENSMUST00000146781
Transcript ID Liver Muscle Ovary Placenta
ENSMUST00000146781 0.164±0.04 0.067±0.03 1.882±0.00 1.741±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072N CIL_00072N_0002 CGP 4:43492900-43499695
CIL_00072O CIL_00072O_0002 CGP 4:43496142-43513729

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378387 ARHGEF39-001 protein_coding Homo_sapiens 0 547
ENST00000468876 ARHGEF39-006 processed_transcript Homo_sapiens 0 477
ENST00000475323 ARHGEF39-003 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000490638 ARHGEF39-004 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000490970 ARHGEF39-002 processed_transcript Homo_sapiens 0 326

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