C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein R pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453465 HNRNPRP1-001 ENSG00000223984 9606 - 10:21624592-21626286 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartMuscleOvaryPlacentaTestisENST00000453465
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Muscle Ovary Placenta Testis
ENST00000453465 0.007±0.00 0.054±0.00 0.131±0.00 0.059±0.00 0.182±0.00 0.063±0.00 0.014±0.00 0.286±0.34 0.029±0.00 0.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096N CIL_00096N_0001 VISTA 10:21215719-21816526
CIL_000781 CIL_000781_0002 CGP 10:21513478-21743630
CIL_0007JW CIL_0007JW_0001 UCNEbase 10:21518181-21922252
CIL_000238 CIL_000238_0001 CGP 10:21534165-22003769

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148843 Hnrnpr-001 protein_coding Mus_musculus 0 1884
ENSMUST00000105850 Hnrnpr-002 protein_coding Mus_musculus 0 1884
ENSMUST00000131671 Hnrnpr-003 protein_coding Mus_musculus 0 1884
ENSMUST00000084219 Hnrnpr-007 protein_coding Mus_musculus 0 1862
ENSMUST00000191249 RP23-395H12.1-001 processed_pseudogene Mus_musculus 0 1753
ENSMUST00000134524 Hnrnpr-006 protein_coding Mus_musculus 0 752
ENSMUST00000145282 Hnrnpr-008 nonsense_mediated_decay Mus_musculus 0 689
ENSMUST00000182327 Hnrnpr-010 retained_intron Mus_musculus 0 660
ENSMUST00000125696 Hnrnpr-005 protein_coding Mus_musculus 0 429
ENSDART00000129870 syncrip-201 protein_coding Danio_rerio 0 272
ENSDART00000058779 syncrip-001 protein_coding Danio_rerio 0 272
ENSDART00000132186 syncrip-002 protein_coding Danio_rerio 0 259
ENSMUST00000153505 Hnrnpr-009 retained_intron Mus_musculus 0 243

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