C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calmodulin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150137 Calm2-002 ENSMUSG00000036438 10090 - 17:87434894-87446849 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaTestisENSMUST00000150137
Transcript ID Brain Liver Ovary Placenta Testis
ENSMUST00000150137 1926.150±0.00 57.725±13.14 240.074±235.68 748.501±333.24 1719.800±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D2 CIL_0008D2_0002 VISTA 17:87075116-87678515

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272298 CALM2-001 protein_coding Homo_sapiens 0 651
ENST00000400429 CALM2P3-001 processed_pseudogene Homo_sapiens 0 484
ENST00000409563 CALM2-007 protein_coding Homo_sapiens 0 527
ENST00000422269 RP11-761B3.1-001 nonsense_mediated_decay Homo_sapiens 8e-29 132
ENST00000428512 CALM2P2-001 processed_pseudogene Homo_sapiens 0 501
ENST00000430810 CALM2P4-001 processed_pseudogene Homo_sapiens 0 490
ENST00000432899 CALM2-002 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000456319 CALM2-006 protein_coding Homo_sapiens 0 582
ENST00000460218 CALM2-003 retained_intron Homo_sapiens 0 580
ENST00000482532 CALM2-004 retained_intron Homo_sapiens 0 527
ENST00000484408 CALM2-009 processed_transcript Homo_sapiens 0 582
ENST00000489742 CALM2-008 processed_transcript Homo_sapiens 0 398
ENST00000585658 CALM2P1-001 processed_pseudogene Homo_sapiens 0 407

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