C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP56 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150745 Nop56-002 ENSMUSG00000027405 10090 + 2:130274444-130279312 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FW CIL_0000FW_0002 CGP 2:130195194-130279313
CIL_0000FV CIL_0000FV_0002 CGP 2:130274430-130284547

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329276 NOP56-009 protein_coding Homo_sapiens 0 486
ENST00000415272 NOP56-010 protein_coding Homo_sapiens 0 213
ENST00000445139 NOP56-016 protein_coding Homo_sapiens 0 481
ENST00000447491 NOP56P2-001 processed_pseudogene Homo_sapiens 1e-16 92
ENST00000466447 NOP56-006 processed_transcript Homo_sapiens 2e-39 167
ENST00000467196 NOP56-007 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000469588 NOP56-002 processed_transcript Homo_sapiens 0 460
ENST00000470143 NOP56-014 processed_transcript Homo_sapiens 0 289
ENST00000480447 NOP56-004 processed_transcript Homo_sapiens 5e-34 148
ENST00000480992 NOP56-003 processed_transcript Homo_sapiens 0 390
ENST00000484998 NOP56-017 processed_transcript Homo_sapiens 0 390
ENST00000492135 NOP56-011 processed_transcript Homo_sapiens 0 372
ENST00000494697 NOP56-012 processed_transcript Homo_sapiens 0 287
ENST00000612233 NOP56-019 retained_intron Homo_sapiens 0 800
ENST00000616692 NOP56-020 retained_intron Homo_sapiens 0 684

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