C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP56 ribonucleoprotein pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447491 NOP56P2-001 ENSG00000226626 9606 + 9:23681894-23682662 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000447491
Transcript ID Brain
ENST00000447491 0.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VP CIL_0007VP_0001 VISTA 9:23196287-23797396

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184633 Gm27219-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000117810 Gm9432-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000028890 Nop56-005 protein_coding Mus_musculus 0 322
ENSMUST00000153353 Nop56-004 retained_intron Mus_musculus 0 322
ENSMUST00000149955 Nop56-010 nonsense_mediated_decay Mus_musculus 0 322
ENSMUST00000103198 Nop56-001 protein_coding Mus_musculus 0 322
ENSMUST00000133351 Nop56-016 retained_intron Mus_musculus 0 315
ENSMUST00000150401 Nop56-013 nonsense_mediated_decay Mus_musculus 0 315
ENSMUST00000146454 Nop56-014 protein_coding Mus_musculus 0 315
ENSMUST00000159373 Nop56-018 protein_coding Mus_musculus 0 298
ENSMUST00000122451 Gm1947-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000143547 Nop56-012 nonsense_mediated_decay Mus_musculus 0 237
ENSMUST00000162063 Nop56-011 retained_intron Mus_musculus 0 237
ENSMUST00000145335 Nop56-017 retained_intron Mus_musculus 3.00018e-42 176
ENSMUST00000161543 Nop56-003 retained_intron Mus_musculus 5e-40 169
ENSMUST00000150745 Nop56-002 retained_intron Mus_musculus 1e-16 92

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