C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156045 Hdac7-009 ENSMUSG00000022475 10090 - 15:97797799-97831469 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryENSMUST00000156045
Transcript ID Adrenal Breast Colon Lung Ovary
ENSMUST00000156045 30.849±2.01 31.461±0.58 6.495±0.55 37.806±13.69 15.434±1.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OC CIL_0002OC_0002 CGP 15:97744770-97792692
CIL_0003DF CIL_0003DF_0003 CGP 15:97784355-97844502
CIL_0003DI CIL_0003DI_0003 CGP 15:97792664-97910630

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001570 IMP vasculogenesis
GO:0003682 IDA chromatin binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0007043 IMP cell-cell junction assembly
GO:0008152 IEA metabolic process
GO:0016787 IEA hydrolase activity
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000080059 HDAC7-001 protein_coding Homo_sapiens 0 944
ENST00000225983 HDAC5-003 protein_coding Homo_sapiens 1e-18 100
ENST00000354334 HDAC7-002 protein_coding Homo_sapiens 0 1648
ENST00000380610 HDAC7-029 protein_coding Homo_sapiens 0 944
ENST00000417107 HDAC7-009 protein_coding Homo_sapiens 0 263
ENST00000417902 HDAC7-018 protein_coding Homo_sapiens 0 551
ENST00000421231 HDAC7-016 protein_coding Homo_sapiens 0 449
ENST00000422254 HDAC7-021 protein_coding Homo_sapiens 0 392
ENST00000427332 HDAC7-013 protein_coding Homo_sapiens 0 944
ENST00000430670 HDAC7-019 protein_coding Homo_sapiens 0 394
ENST00000433685 HDAC7-011 protein_coding Homo_sapiens 0 305
ENST00000434070 HDAC7-014 protein_coding Homo_sapiens 0 492
ENST00000440293 HDAC7-020 protein_coding Homo_sapiens 0 566
ENST00000445237 HDAC7-015 protein_coding Homo_sapiens 0 196
ENST00000447463 HDAC7-012 protein_coding Homo_sapiens 0 490
ENST00000450805 HDAC7-010 protein_coding Homo_sapiens 0 383
ENST00000459625 HDAC7-007 retained_intron Homo_sapiens 0 405
ENST00000463732 HDAC7-023 retained_intron Homo_sapiens 0 438
ENST00000470668 HDAC7-005 retained_intron Homo_sapiens 0 1013
ENST00000471235 HDAC7-008 retained_intron Homo_sapiens 2e-39 167
ENST00000477203 HDAC7-030 nonsense_mediated_decay Homo_sapiens 0 1616
ENST00000477937 HDAC7-026 processed_transcript Homo_sapiens 0 405
ENST00000485796 HDAC7-022 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000488927 HDAC7-027 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000491464 HDAC7-024 retained_intron Homo_sapiens 0 252
ENST00000548080 HDAC7-031 protein_coding Homo_sapiens 0 399
ENST00000548938 HDAC7-003 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000552960 HDAC7-028 protein_coding Homo_sapiens 0 944
ENST00000586802 HDAC5-002 protein_coding Homo_sapiens 8e-19 100
ENST00000588419 HDAC5-012 retained_intron Homo_sapiens 2e-19 100
ENST00000592385 HDAC5-004 retained_intron Homo_sapiens 6e-19 100
ENST00000593013 HDAC5-005 retained_intron Homo_sapiens 1e-18 99

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