C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156422 Sema6a-007 ENSMUSG00000019647 10090 - 18:47248383-47333348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENSMUST00000156422
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENSMUST00000156422 2.116±0.79 1.213±0.12 1.196±0.00 1.151±0.46 2.313±0.40 0.752±0.03 1.174±0.00 6.290±1.10 0.235±0.00 1.458±0.34 0.207±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L9 CIL_0004L9_0002 CGP 18:46958862-47368870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0004888 IMP transmembrane signaling receptor activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006915 NAS apoptotic process
GO:0007166 IDA cell surface receptor signaling pathway
GO:0007411 NAS axon guidance
GO:0016020 NAS membrane
GO:0030215 IPI semaphorin receptor binding
GO:0030424 NAS axon
GO:0051642 IMP centrosome localization
GO:0071526 IMP semaphorin-plexin signaling pathway
GO:2001224 IMP positive regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257414 SEMA6A-002 protein_coding Homo_sapiens 0 2222
ENST00000343348 SEMA6A-001 protein_coding Homo_sapiens 0 4023
ENST00000502996 SEMA6A-011 processed_transcript Homo_sapiens 0.00001 55
ENST00000503402 SEMA6A-012 retained_intron Homo_sapiens 0 424
ENST00000503865 SEMA6A-006 protein_coding Homo_sapiens 0 1640
ENST00000503962 SEMA6A-010 processed_transcript Homo_sapiens 0 706
ENST00000506114 SEMA6A-014 processed_transcript Homo_sapiens 0 675
ENST00000509665 SEMA6A-009 protein_coding Homo_sapiens 0 547
ENST00000510263 SEMA6A-003 protein_coding Homo_sapiens 0 4209
ENST00000513137 SEMA6A-005 protein_coding Homo_sapiens 0 1803
ENST00000514316 SEMA6A-015 processed_transcript Homo_sapiens 0 401
ENST00000515009 SEMA6A-008 protein_coding Homo_sapiens 0 695
ENST00000515129 SEMA6A-004 protein_coding Homo_sapiens 0 1639

Loading