C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156486 Kras-006 ENSMUSG00000030265 10090 - 6:145220297-145250170 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000156486
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000156486 18.888±0.00 10.819±0.00 16.293±0.33 8.263±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XB CIL_0008XB_0002 VISTA 6:144644642-145246014
CIL_0004XD CIL_0004XD_0002 CGP 6:145174834-145216939
CIL_0006UC CIL_0006UC_0002 CGP 6:145211134-145250239
CIL_0004X7 CIL_0004X7_0002 CGP 6:145216699-145614319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 TAS GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0007265 TAS Ras protein signal transduction
GO:0008284 IGI positive regulation of cell proliferation
GO:0008542 IGI visual learning
GO:0016020 IDA membrane
GO:0030036 IGI actin cytoskeleton organization
GO:0032228 IGI regulation of synaptic transmission, GABAergic
GO:0032403 ISO protein complex binding
GO:0035022 IGI positive regulation of Rac protein signal transduction
GO:0043524 IGI negative regulation of neuron apoptotic process
GO:0045596 IDA negative regulation of cell differentiation
GO:0048169 IGI regulation of long-term neuronal synaptic plasticity
GO:0051146 IGI striated muscle cell differentiation
GO:0060441 IDA epithelial tube branching involved in lung morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009126 kras-201 protein_coding Danio_rerio 0 193
ENST00000256078 KRAS-004 protein_coding Homo_sapiens 0 427
ENST00000311936 KRAS-001 protein_coding Homo_sapiens 0 647
ENST00000407852 KRASP1-001 processed_pseudogene Homo_sapiens 0 222
ENST00000556131 KRAS-002 protein_coding Homo_sapiens 0 239
ENST00000557334 KRAS-003 protein_coding Homo_sapiens 0 431

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