C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phenylalanyl-tRNA synthetase, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156970 Farsa-003 ENSMUSG00000003808 10090 + 8:84857020-84869256 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000156970
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000156970 9.070±2.34 4.366±0.00 3.629±0.20 6.827±2.52 9.172±4.74 3.522±0.12 3.709±1.47 4.716±1.08 6.710±3.79 4.185±0.76 2.341±0.45 9.463±2.18 15.019±3.34 8.058±2.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0006LV CIL_0006LV_0002 CGP 8:84856989-84888221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314606 FARSA-001 protein_coding Homo_sapiens 0 1349
ENST00000423140 FARSA-002 protein_coding Homo_sapiens 0 1013
ENST00000586146 FARSA-004 nonsense_mediated_decay Homo_sapiens 0 876
ENST00000586280 FARSA-009 retained_intron Homo_sapiens 0 536
ENST00000587488 FARSA-010 protein_coding Homo_sapiens 0 448
ENST00000587981 FARSA-007 protein_coding Homo_sapiens 1e-34 150
ENST00000588025 FARSA-006 protein_coding Homo_sapiens 0 1349
ENST00000588965 FARSA-003 retained_intron Homo_sapiens 0 821
ENST00000592662 FARSA-008 retained_intron Homo_sapiens 0 479
ENST00000593021 FARSA-005 protein_coding Homo_sapiens 0 1070

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