C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160486 Usf1-002 ENSMUSG00000026641 10090 + 1:171411384-171418757 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastTestisENSMUST00000160486
Transcript ID Adrenal Breast Testis
ENSMUST00000160486 4.678±0.00 7.708±0.00 1.328±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026D CIL_00026D_0002 CGP 1:171411313-171464603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005667 IC transcription factor complex
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368019 USF1-003 protein_coding Homo_sapiens 0 643
ENST00000368020 USF1-002 protein_coding Homo_sapiens 0 1210
ENST00000368021 USF1-001 protein_coding Homo_sapiens 0 1227
ENST00000472217 USF1-005 retained_intron Homo_sapiens 0 385
ENST00000473969 USF1-004 nonsense_mediated_decay Homo_sapiens 0 852
ENST00000491629 USF1-007 retained_intron Homo_sapiens 0 758
ENST00000496363 USF1-006 retained_intron Homo_sapiens 0 1090
ENST00000528768 USF1-009 protein_coding Homo_sapiens 0 508
ENST00000529476 USF1-010 retained_intron Homo_sapiens 0 381
ENST00000531842 USF1-011 protein_coding Homo_sapiens 0 501
ENST00000534633 USF1-008 protein_coding Homo_sapiens 0 717

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