C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6485
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160676 Gm6485-001 ENSMUSG00000089999 10090 - 3:104752727-104753165 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160676
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160676 0.422±0.30 0.193±0.00 0.179±0.12 1.072±0.89 0.151±0.00 0.312±0.18 0.181±0.05 0.205±0.08 0.343±0.42 0.255±0.12 0.384±0.00 0.685±0.27 0.269±0.14 0.353±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000878 CIL_000878_0002 VISTA 3:104296935-104900599
CIL_0009BY CIL_0009BY_0002 VISTA 3:104296978-104900566

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066545 h3f3a-202 protein_coding Danio_rerio 0 270
ENSDART00000137017 h3f3a-001 protein_coding Danio_rerio 0 270
ENSDART00000157370 hist2h3c-001 protein_coding Danio_rerio 0 228
ENST00000254810 H3F3B-001 protein_coding Homo_sapiens 0 475
ENST00000340398 H3F3C-001 protein_coding Homo_sapiens 0 424
ENST00000586270 H3F3B-006 protein_coding Homo_sapiens 0 453
ENST00000586518 H3F3B-012 retained_intron Homo_sapiens 0 200
ENST00000586607 H3F3B-003 protein_coding Homo_sapiens 0 475
ENST00000587560 H3F3B-007 protein_coding Homo_sapiens 0 475
ENST00000589599 H3F3B-005 protein_coding Homo_sapiens 0 475
ENST00000589949 H3F3B-008 retained_intron Homo_sapiens 0 200
ENST00000591890 H3F3B-011 protein_coding Homo_sapiens 0 416
ENST00000592643 H3F3B-010 protein_coding Homo_sapiens 0 198
ENST00000593254 H3F3B-002 processed_transcript Homo_sapiens 0 294

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