C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340398 H3F3C-001 ENSG00000188375 9606 - 12:31791185-31792241 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340398
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340398 0.144±0.00 1.039±0.00 0.155±0.00 0.163±0.00 0.082±0.00 0.022±0.00 0.011±0.00 0.020±0.00 0.154±0.00 0.011±0.00 0.192±0.05 0.113±0.08 7.895±3.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HZ CIL_0008HZ_0001 VISTA 12:31414716-32015883

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005719 IDA nuclear euchromatin
GO:0030307 IMP positive regulation of cell growth
GO:0031492 IDA nucleosomal DNA binding
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016703 H3f3b-201 protein_coding Mus_musculus 0 1242
ENSMUST00000106454 H3f3b-001 protein_coding Mus_musculus 0 1242
ENSMUST00000139623 H3f3b-002 processed_transcript Mus_musculus 0 673
ENSMUST00000160676 Gm6485-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000139378 H3f3b-003 processed_transcript Mus_musculus 0 381
ENSDART00000066545 h3f3a-202 protein_coding Danio_rerio 0 324
ENSDART00000137017 h3f3a-001 protein_coding Danio_rerio 0 324
ENSDART00000157370 hist2h3c-001 protein_coding Danio_rerio 0 307
ENSMUST00000122447 Gm12260-001 unprocessed_pseudogene Mus_musculus 0 261

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