C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161241 Usf1-001 ENSMUSG00000026641 10090 + 1:171411313-171419142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverOvaryPlacentaENSMUST00000161241
Transcript ID Bladder Liver Ovary Placenta
ENSMUST00000161241 3.590±0.00 2.037±0.60 6.961±1.84 3.754±1.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026D CIL_00026D_0002 CGP 1:171411313-171464603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000432 IMP positive regulation of transcription from RNA polymerase II promoter by glucose
GO:0001666 IEA response to hypoxia
GO:0003677 IDA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IC transcription factor complex
GO:0006006 IEA glucose metabolic process
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0009411 IMP response to UV
GO:0019086 IEA late viral transcription
GO:0019899 IEA enzyme binding
GO:0019901 IEA protein kinase binding
GO:0032869 IEA cellular response to insulin stimulus
GO:0042803 IEA protein homodimerization activity
GO:0042826 IEA histone deacetylase binding
GO:0043425 IEA bHLH transcription factor binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0055088 IMP lipid homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368019 USF1-003 protein_coding Homo_sapiens 0 656
ENST00000368020 USF1-002 protein_coding Homo_sapiens 0 1596
ENST00000368021 USF1-001 protein_coding Homo_sapiens 0 1688
ENST00000472217 USF1-005 retained_intron Homo_sapiens 0 518
ENST00000473969 USF1-004 nonsense_mediated_decay Homo_sapiens 0 965
ENST00000491629 USF1-007 retained_intron Homo_sapiens 0 758
ENST00000496363 USF1-006 retained_intron Homo_sapiens 0 1090
ENST00000528768 USF1-009 protein_coding Homo_sapiens 0 584
ENST00000529476 USF1-010 retained_intron Homo_sapiens 0 403
ENST00000531842 USF1-011 protein_coding Homo_sapiens 0 501
ENST00000534633 USF1-008 protein_coding Homo_sapiens 0 717

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