C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cullin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163119 Cul3-001 ENSMUSG00000004364 10090 - 1:80264923-80340480 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163119
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163119 4.411±0.86 4.250±1.39 5.851±1.81 8.913±1.29 3.268±0.77 2.546±0.97 5.413±0.92 2.712±0.59 3.506±1.61 4.285±0.13 14.826±6.28 4.119±1.74 5.340±0.60 6.455±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XN CIL_0006XN_0002 CGP 1:80198706-80340480
CIL_0006XM CIL_0006XM_0002 CGP 1:80264923-80758527

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0000209 ISS protein polyubiquitination
GO:0000902 IMP cell morphogenesis
GO:0001701 IMP in utero embryonic development
GO:0001831 IMP trophectodermal cellular morphogenesis
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005794 IDA Golgi apparatus
GO:0005827 ISS polar microtubule
GO:0006513 ISS protein monoubiquitination
GO:0006888 ISS ER to Golgi vesicle-mediated transport
GO:0007080 ISS mitotic metaphase plate congression
GO:0007229 IMP integrin-mediated signaling pathway
GO:0007369 IMP gastrulation
GO:0008054 ISS cyclin catabolic process
GO:0016020 IEA membrane
GO:0016055 IDA Wnt signaling pathway
GO:0016477 ISS cell migration
GO:0016567 ISS protein ubiquitination
GO:0017145 IMP stem cell division
GO:0030332 IPI cyclin binding
GO:0031208 ISS POZ domain binding
GO:0031463 ISS Cul3-RING ubiquitin ligase complex
GO:0031625 IEA ubiquitin protein ligase binding
GO:0032467 ISS positive regulation of cytokinesis
GO:0035024 ISS negative regulation of Rho protein signal transduction
GO:0040016 IMP embryonic cleavage
GO:0042803 IDA protein homodimerization activity
GO:0043149 ISS stress fiber assembly
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045842 ISS positive regulation of mitotic metaphase/anaphase transition
GO:0046982 IPI protein heterodimerization activity
GO:0048208 ISS COPII vesicle coating
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125379 protein_coding Danio_rerio 2e-35 156
ENST00000264414 CUL3-001 protein_coding Homo_sapiens 0 5001
ENST00000344951 CUL3-201 protein_coding Homo_sapiens 0 4446
ENST00000409096 CUL3-002 protein_coding Homo_sapiens 0 3919
ENST00000409777 CUL3-003 protein_coding Homo_sapiens 0 3895
ENST00000432260 CUL3-013 nonsense_mediated_decay Homo_sapiens 0 470
ENST00000436172 CUL3-006 protein_coding Homo_sapiens 0 749
ENST00000451538 CUL3-011 protein_coding Homo_sapiens 0 538
ENST00000454323 CUL3-010 nonsense_mediated_decay Homo_sapiens 0 924
ENST00000481135 CUL3-009 retained_intron Homo_sapiens 0 394
ENST00000484081 CUL3-008 retained_intron Homo_sapiens 0 534
ENST00000487558 CUL3-004 retained_intron Homo_sapiens 0 429
ENST00000497715 CUL3-005 retained_intron Homo_sapiens 0 939
ENST00000536702 CUL3-015 processed_transcript Homo_sapiens 0 348
ENST00000541548 CUL3-014 processed_transcript Homo_sapiens 0 630
ENST00000546102 CUL3-012 processed_transcript Homo_sapiens 0 363
ENST00000617432 CUL3-202 protein_coding Homo_sapiens 0 2169

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