C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cullin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164108 Cul3-002 ENSMUSG00000004364 10090 - 1:80266823-80340311 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164108
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164108 7.711±0.71 6.504±2.07 17.983±0.23 20.666±15.85 9.953±2.61 4.578±1.83 11.293±0.78 11.605±1.22 9.745±2.16 7.863±1.58 39.504±3.43 14.499±13.72 33.436±19.91 88.542±60.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XN CIL_0006XN_0002 CGP 1:80198706-80340480
CIL_0006XM CIL_0006XM_0002 CGP 1:80264923-80758527

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IMP cell morphogenesis
GO:0001701 IMP in utero embryonic development
GO:0001831 IMP trophectodermal cellular morphogenesis
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005794 IDA Golgi apparatus
GO:0007369 IMP gastrulation
GO:0008054 ISS cyclin catabolic process
GO:0016055 IDA Wnt signaling pathway
GO:0030332 IPI cyclin binding
GO:0031461 IEA cullin-RING ubiquitin ligase complex
GO:0031625 IEA ubiquitin protein ligase binding
GO:0042803 IDA protein homodimerization activity
GO:0043161 IGI proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046982 IPI protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125379 protein_coding Danio_rerio 1e-35 156
ENST00000264414 CUL3-001 protein_coding Homo_sapiens 0 3583
ENST00000344951 CUL3-201 protein_coding Homo_sapiens 0 3703
ENST00000409096 CUL3-002 protein_coding Homo_sapiens 0 3561
ENST00000409777 CUL3-003 protein_coding Homo_sapiens 0 3535
ENST00000432260 CUL3-013 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000436172 CUL3-006 protein_coding Homo_sapiens 0 388
ENST00000451538 CUL3-011 protein_coding Homo_sapiens 0 538
ENST00000454323 CUL3-010 nonsense_mediated_decay Homo_sapiens 0 924
ENST00000481135 CUL3-009 retained_intron Homo_sapiens 0 394
ENST00000484081 CUL3-008 retained_intron Homo_sapiens 0 534
ENST00000487558 CUL3-004 retained_intron Homo_sapiens 0 429
ENST00000497715 CUL3-005 retained_intron Homo_sapiens 0 924
ENST00000536702 CUL3-015 processed_transcript Homo_sapiens 0 348
ENST00000541548 CUL3-014 processed_transcript Homo_sapiens 0 630
ENST00000546102 CUL3-012 processed_transcript Homo_sapiens 0.000000001 68
ENST00000617432 CUL3-202 protein_coding Homo_sapiens 0 2169

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