C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUMO/sentrin specific peptidase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164859 Senp6-002 ENSMUSG00000034252 10090 + 9:80066973-80144168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000164859
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000164859 0.926±0.20 2.761±0.47 3.341±0.33 0.445±0.00 0.863±0.21 1.517±0.44 1.695±0.84 2.139±0.64 2.252±0.00 4.358±1.69 3.942±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PT CIL_0006PT_0002 CGP 9:79815051-80144953
CIL_0006PS CIL_0006PS_0002 CGP 9:80066903-80311729

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0006508 IEA proteolysis
GO:0008270 IEA zinc ion binding
GO:0016925 IEA protein sumoylation
GO:0016926 ISS protein desumoylation
GO:0016929 ISS SUMO-specific protease activity
GO:0070646 ISS protein modification by small protein removal
GO:0090169 ISS regulation of spindle assembly
GO:0090234 ISS regulation of kinetochore assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327284 SENP6-010 protein_coding Homo_sapiens 0 1306
ENST00000370010 SENP6-002 protein_coding Homo_sapiens 0 2684
ENST00000424947 SENP6-007 protein_coding Homo_sapiens 0 1306
ENST00000447266 SENP6-004 protein_coding Homo_sapiens 0 2684
ENST00000474906 SENP6-009 retained_intron Homo_sapiens 0 520
ENST00000476060 SENP6-008 retained_intron Homo_sapiens 0 315
ENST00000503501 SENP6-011 nonsense_mediated_decay Homo_sapiens 0 1267

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