C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5-hydroxytryptamine (serotonin) receptor 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165215 Htr7-002 ENSMUSG00000024798 10090 - 19:35958734-36057360 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyMuscleOvaryENSMUST00000165215
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Muscle Ovary
ENSMUST00000165215 0.208±0.00 0.065±0.00 0.548±0.14 0.054±0.00 0.156±0.00 0.028±0.02 0.387±0.00 0.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PF CIL_0005PF_0003 CGP 19:34922358-36057507
CIL_0008BY CIL_0008BY_0002 VISTA 19:35829039-36429586
CIL_0005UK CIL_0005UK_0002 CGP 19:35958734-36104772

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004993 IEA serotonin receptor activity
GO:0006939 IEA smooth muscle contraction
GO:0007210 IEA serotonin receptor signaling pathway
GO:0007268 IEA synaptic transmission
GO:0007623 IEA circadian rhythm
GO:0016021 IEA integral component of membrane
GO:0042310 IEA vasoconstriction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277874 HTR7-002 protein_coding Homo_sapiens 0 1668
ENST00000336152 HTR7-001 protein_coding Homo_sapiens 0 992
ENST00000371719 HTR7-003 protein_coding Homo_sapiens 0 1644
ENST00000538670 HTR7P1-001 transcribed_processed_pseudogene Homo_sapiens 0 769
ENST00000624664 HTR7P1-002 TEC Homo_sapiens 0 1053

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