C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167546 Usf1-201 ENSMUSG00000026641 10090 + 1:171411681-171418743 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167546
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167546 13.365±2.71 10.761±2.95 10.547±0.68 24.999±7.23 9.469±3.67 19.632±2.05 5.785±2.15 10.048±1.09 5.466±0.83 15.534±0.37 7.207±1.50 19.263±3.75 12.451±2.51 2.932±1.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026D CIL_00026D_0002 CGP 1:171411313-171464603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000432 IMP positive regulation of transcription from RNA polymerase II promoter by glucose
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005667 IC transcription factor complex
GO:0009411 IMP response to UV
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0055088 IMP lipid homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368019 USF1-003 protein_coding Homo_sapiens 0 656
ENST00000368020 USF1-002 protein_coding Homo_sapiens 0 1598
ENST00000368021 USF1-001 protein_coding Homo_sapiens 0 1594
ENST00000472217 USF1-005 retained_intron Homo_sapiens 0 518
ENST00000473969 USF1-004 nonsense_mediated_decay Homo_sapiens 0 965
ENST00000491629 USF1-007 retained_intron Homo_sapiens 0 741
ENST00000496363 USF1-006 retained_intron Homo_sapiens 0 1074
ENST00000528768 USF1-009 protein_coding Homo_sapiens 0 584
ENST00000529476 USF1-010 retained_intron Homo_sapiens 0 364
ENST00000531842 USF1-011 protein_coding Homo_sapiens 0 501
ENST00000534633 USF1-008 protein_coding Homo_sapiens 0 708

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