C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5-hydroxytryptamine (serotonin) receptor 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170360 Htr7-003 ENSMUSG00000024798 10090 - 19:35959820-36057507 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000170360
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000170360 0.155±0.03 0.020±0.00 0.244±0.06 0.153±0.10 0.115±0.02 0.072±0.00 0.017±0.00 0.198±0.05 0.065±0.00 0.100±0.08 0.067±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PF CIL_0005PF_0003 CGP 19:34922358-36057507
CIL_0008BY CIL_0008BY_0002 VISTA 19:35829039-36429586
CIL_0005UK CIL_0005UK_0002 CGP 19:35958734-36104772

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004993 IEA serotonin receptor activity
GO:0006939 IEA smooth muscle contraction
GO:0007210 IEA serotonin receptor signaling pathway
GO:0007268 IEA synaptic transmission
GO:0007623 IEA circadian rhythm
GO:0016021 IEA integral component of membrane
GO:0042310 IEA vasoconstriction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277874 HTR7-002 protein_coding Homo_sapiens 0 1020
ENST00000336152 HTR7-001 protein_coding Homo_sapiens 0 1020
ENST00000371719 HTR7-003 protein_coding Homo_sapiens 0 1020
ENST00000538670 HTR7P1-001 transcribed_processed_pseudogene Homo_sapiens 0 763
ENST00000624664 HTR7P1-002 TEC Homo_sapiens 0 773

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