C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171263 Gbp7-202 ENSMUSG00000040253 10090 + 3:142530338-142550083 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171263
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171263 3.972±0.32 1.381±0.32 5.169±1.61 0.205±0.12 2.485±0.81 1.006±0.35 1.448±0.24 1.830±0.16 1.899±0.96 4.139±0.56 1.961±0.31 2.239±1.72 1.875±1.42 0.155±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091X CIL_00091X_0002 VISTA 3:141937411-142539503
CIL_000033 CIL_000033_000D CGP 3:142496934-142619179
CIL_000033 CIL_000033_000C CGP 3:142530338-142573209

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0020005 IDA symbiont-containing vacuole membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0042832 IDA defense response to protozoan
GO:0044406 IDA adhesion of symbiont to host
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0071346 IDA cellular response to interferon-gamma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000235878 GBP3-002 nonsense_mediated_decay Homo_sapiens 0 217
ENST00000294671 GBP7-001 protein_coding Homo_sapiens 0 1136
ENST00000355754 GBP4-001 protein_coding Homo_sapiens 0 1201
ENST00000370456 GBP6-001 protein_coding Homo_sapiens 0 1070
ENST00000370481 GBP3-008 protein_coding Homo_sapiens 0 265
ENST00000370482 GBP3-009 retained_intron Homo_sapiens 0 265
ENST00000475853 GBP3-004 processed_transcript Homo_sapiens 0.0000000004 69
ENST00000489444 GBP3-005 nonsense_mediated_decay Homo_sapiens 0 265
ENST00000493594 GBP3-003 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000564665 GBP3-010 protein_coding Homo_sapiens 0 198
ENST00000568006 GBP3-012 nonsense_mediated_decay Homo_sapiens 0.0000000004 69

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