C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonuclease P/MRP 40kDa subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000319533 RPP40-002 ENSG00000124787 9606 - 6:4995047-5004036 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000319533
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000319533 1.234±0.00 2.395±0.00 0.707±0.00 1.209±0.00 0.469±0.15 1.073±0.00 1.237±0.00 0.648±0.02 0.948±0.02 1.064±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000162 CIL_000162_0002 CGP 6:4706159-5004063
CIL_0003SE CIL_0003SE_0001 CGP 6:4994732-5089487

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004526 IEA ribonuclease P activity
GO:0005634 TAS nucleus
GO:0005655 TAS nucleolar ribonuclease P complex
GO:0008033 IEA tRNA processing
GO:0090501 TAS RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174230 Rpp40-002 protein_coding Mus_musculus 0 1014
ENSMUST00000171686 Rpp40-001 protein_coding Mus_musculus 0 725
ENSMUST00000174852 Rpp40-003 retained_intron Mus_musculus 0 617
ENSMUST00000174231 Rpp40-004 protein_coding Mus_musculus 0 206

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