C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172407 Psma4-002 ENSMUSG00000032301 10090 + 9:54950815-54956933 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000172407
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000172407 20.369±2.26 6.855±1.27 30.315±15.16 9.755±1.70 37.160±2.97 24.156±2.02 21.146±3.31 14.966±3.18 13.629±0.30 17.743±7.17 11.303±2.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TW CIL_0003TW_0002 CGP 9:54950790-55007779

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005839 IDA proteasome core complex
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0019773 IEA proteasome core complex, alpha-subunit complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000044462 PSMA4-001 protein_coding Homo_sapiens 0 900
ENST00000413382 PSMA4-004 protein_coding Homo_sapiens 0 556
ENST00000557929 PSMA4-005 processed_transcript Homo_sapiens 0 791
ENST00000558094 PSMA4-021 protein_coding Homo_sapiens 0 303
ENST00000558281 PSMA4-019 protein_coding Homo_sapiens 0 756
ENST00000558341 PSMA4-017 protein_coding Homo_sapiens 0 457
ENST00000558639 PSMA4-010 retained_intron Homo_sapiens 0 451
ENST00000559082 PSMA4-006 protein_coding Homo_sapiens 0 900
ENST00000559146 PSMA4-018 protein_coding Homo_sapiens 0 446
ENST00000559154 PSMA4-020 protein_coding Homo_sapiens 0 448
ENST00000559365 PSMA4-015 protein_coding Homo_sapiens 0 900
ENST00000559437 PSMA4-016 protein_coding Homo_sapiens 0 898
ENST00000559934 PSMA4-002 retained_intron Homo_sapiens 0 800
ENST00000559948 PSMA4-014 protein_coding Homo_sapiens 0 785
ENST00000560033 PSMA4-007 retained_intron Homo_sapiens 0 246
ENST00000560099 PSMA4-003 retained_intron Homo_sapiens 0 556
ENST00000560217 PSMA4-009 protein_coding Homo_sapiens 0 662
ENST00000560737 PSMA4-012 protein_coding Homo_sapiens 0 900
ENST00000560842 PSMA4-011 retained_intron Homo_sapiens 8e-22 108

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