C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 8203
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173192 RP23-374K9.2-001 ENSMUSG00000101878 10090 + 6:116173737-116174123 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000173192
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000173192 6.140±1.75 0.558±0.13 4.138±0.95 4.387±0.34 2.238±0.90 3.044±0.89 0.950±0.40 2.011±0.78 4.777±3.97 2.415±0.87 0.503±0.10 11.952±7.40 5.211±1.33 5.246±1.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000315 CIL_000315_0002 CGP 6:115954811-116193486
CIL_00081B CIL_00081B_0002 VISTA 6:116052182-116663911

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296417 H2AFZ-001 protein_coding Homo_sapiens 0 604
ENST00000394213 H2AFZP3-001 processed_pseudogene Homo_sapiens 0 521
ENST00000416034 H2AFZP1-001 processed_pseudogene Homo_sapiens 0 424
ENST00000511203 H2AFZ-003 retained_intron Homo_sapiens 0 375
ENST00000511319 H2AFZ-004 retained_intron Homo_sapiens 0 601
ENST00000511348 H2AFZ-002 retained_intron Homo_sapiens 2.8026e-45 187
ENST00000521867 RP11-152C15.1-001 processed_pseudogene Homo_sapiens 0 529
ENST00000527366 H2AFZ-006 retained_intron Homo_sapiens 0 475
ENST00000529158 H2AFZ-005 processed_transcript Homo_sapiens 0 599
ENST00000534148 H2AFZP4-001 processed_pseudogene Homo_sapiens 0 387

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