C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: syndecan binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000175769 Sdcbp-008 ENSMUSG00000028249 10090 + 4:6365709-6393111 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000175769
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000175769 88.054±0.00 125.124±0.00 103.265±14.18 15.981±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T7 CIL_0001T7_0002 CGP 4:6265612-6408423
CIL_0002RG CIL_0002RG_0002 CGP 4:6365650-6454271

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007265 IPI Ras protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260130 SDCBP-001 protein_coding Homo_sapiens 0 841
ENST00000413219 SDCBP-002 protein_coding Homo_sapiens 0 841
ENST00000424270 SDCBP-004 protein_coding Homo_sapiens 0 758
ENST00000424643 SDCBPP2-001 processed_pseudogene Homo_sapiens 0 586
ENST00000447182 SDCBP-003 protein_coding Homo_sapiens 0 828
ENST00000447267 SDCBP-012 protein_coding Homo_sapiens 0 217
ENST00000519115 SDCBP-013 retained_intron Homo_sapiens 0 654
ENST00000520168 SDCBP-006 protein_coding Homo_sapiens 0 217
ENST00000520228 SDCBP-009 retained_intron Homo_sapiens 0 403
ENST00000522243 SDCBP-008 processed_transcript Homo_sapiens 2e-28 130
ENST00000522843 SDCBP-010 retained_intron Homo_sapiens 0 429
ENST00000523483 SDCBP-005 protein_coding Homo_sapiens 0 828

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