C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap guanine nucleotide exchange factor (GEF) 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000175894 Rapgef3-018 ENSMUSG00000022469 10090 - 15:97745285-97767420 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverLungOvaryPlacentaENSMUST00000175894
Transcript ID Adipose Adrenal Breast Colon Liver Lung Ovary Placenta
ENSMUST00000175894 3.155±0.00 4.989±1.91 4.431±0.88 5.350±1.89 0.333±0.07 8.435±0.00 2.486±0.00 5.677±5.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YT CIL_0005YT_0002 CGP 15:97711019-97767972
CIL_0002OC CIL_0002OC_0002 CGP 15:97744770-97792692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 IDA guanyl-nucleotide exchange factor activity
GO:0043547 IDA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389212 RAPGEF3-017 protein_coding Homo_sapiens 0 2684
ENST00000395358 RAPGEF3-003 protein_coding Homo_sapiens 0 1136
ENST00000395360 RAPGEF3-002 retained_intron Homo_sapiens 0 1554
ENST00000405493 RAPGEF3-201 protein_coding Homo_sapiens 0 2684
ENST00000449771 RAPGEF3-001 protein_coding Homo_sapiens 0 2684
ENST00000473777 RAPGEF3-008 retained_intron Homo_sapiens 0 300
ENST00000476259 RAPGEF3-009 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000479866 RAPGEF3-004 retained_intron Homo_sapiens 0 1026
ENST00000482843 RAPGEF3-005 retained_intron Homo_sapiens 0 1026
ENST00000488250 RAPGEF3-006 retained_intron Homo_sapiens 0 1312
ENST00000490387 RAPGEF3-010 retained_intron Homo_sapiens 0 254
ENST00000494764 RAPGEF3-011 retained_intron Homo_sapiens 0 296
ENST00000495465 RAPGEF3-019 nonsense_mediated_decay Homo_sapiens 0 944
ENST00000547856 RAPGEF3-016 nonsense_mediated_decay Homo_sapiens 0 2902
ENST00000548434 RAPGEF3-014 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000548919 RAPGEF3-007 protein_coding Homo_sapiens 0 1203
ENST00000549151 RAPGEF3-018 protein_coding Homo_sapiens 0 2684

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