C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | Rap guanine nucleotide exchange factor (GEF) 3 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000548919  |
RAPGEF3-007 |
ENSG00000079337 |
9606 | - |
12:47737540-47771040  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0005YT | CIL_0005YT_0001 | CGP | 12:47709734-47771040 |
| CIL_0002OC | CIL_0002OC_0001 | CGP | 12:47734672-47782753 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005085 | IEA | guanyl-nucleotide exchange factor activity |
| GO:0005622 | IEA | intracellular |
| GO:0005952 | IEA | cAMP-dependent protein kinase complex |
| GO:0007264 | IEA | small GTPase mediated signal transduction |
| GO:0008603 | IEA | cAMP-dependent protein kinase regulator activity |
| GO:0035556 | IEA | intracellular signal transduction |
| GO:0043547 | IEA | positive regulation of GTPase activity |
| GO:0045859 | IEA | regulation of protein kinase activity |
| GO:0051056 | IEA | regulation of small GTPase mediated signal transduction |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000123397
|
Rapgef3-004 | retained_intron | Mus_musculus | 0 | 1814 |
|
ENSMUST00000177352
|
Rapgef3-007 | protein_coding | Mus_musculus | 0 | 1814 |
|
ENSMUST00000128775
|
Rapgef3-003 | protein_coding | Mus_musculus | 0 | 1814 |
|
ENSMUST00000129223
|
Rapgef3-001 | protein_coding | Mus_musculus | 0 | 1814 |
|
ENSMUST00000126854
|
Rapgef3-005 | protein_coding | Mus_musculus | 0 | 1814 |
|
ENSMUST00000175894
|
Rapgef3-018 | nonsense_mediated_decay | Mus_musculus | 0 | 1203 |
|
ENSMUST00000149419
|
Rapgef3-009 | nonsense_mediated_decay | Mus_musculus | 0 | 719 |
|
ENSMUST00000134885
|
Rapgef3-002 | protein_coding | Mus_musculus | 0 | 632 |
|
ENSMUST00000146620
|
Rapgef3-008 | protein_coding | Mus_musculus | 0 | 562 |
|
ENSMUST00000153464
|
Rapgef3-010 | processed_transcript | Mus_musculus | 0 | 553 |
|
ENSMUST00000125002
|
Rapgef3-016 | retained_intron | Mus_musculus | 0 | 525 |
|
ENSMUST00000153241
|
Rapgef3-012 | processed_transcript | Mus_musculus | 0 | 446 |
|
ENSMUST00000155810
|
Rapgef3-015 | retained_intron | Mus_musculus | 0 | 412 |
|
ENSMUST00000142196
|
Rapgef3-011 | retained_intron | Mus_musculus | 0 | 353 |
|
ENSMUST00000146214
|
Rapgef3-014 | retained_intron | Mus_musculus | 5.60519e-45 | 187 |
