C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap guanine nucleotide exchange factor (GEF) 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479866 RAPGEF3-004 ENSG00000079337 9606 - 12:47737256-47758838 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyENST00000479866
Transcript ID Heart Kidney
ENST00000479866 0.888±0.00 0.650±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YT CIL_0005YT_0001 CGP 12:47709734-47771040
CIL_0002OC CIL_0002OC_0001 CGP 12:47734672-47782753

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000123397 Rapgef3-004 retained_intron Mus_musculus 0 1175
ENSMUST00000128775 Rapgef3-003 protein_coding Mus_musculus 0 1175
ENSMUST00000129223 Rapgef3-001 protein_coding Mus_musculus 0 1175
ENSMUST00000126854 Rapgef3-005 protein_coding Mus_musculus 0 1175
ENSMUST00000177352 Rapgef3-007 protein_coding Mus_musculus 0 1131
ENSMUST00000175894 Rapgef3-018 nonsense_mediated_decay Mus_musculus 0 1026
ENSMUST00000134885 Rapgef3-002 protein_coding Mus_musculus 0 760
ENSMUST00000149419 Rapgef3-009 nonsense_mediated_decay Mus_musculus 0 721
ENSMUST00000125002 Rapgef3-016 retained_intron Mus_musculus 0 577
ENSMUST00000146214 Rapgef3-014 retained_intron Mus_musculus 0 566
ENSMUST00000146620 Rapgef3-008 protein_coding Mus_musculus 0 562
ENSMUST00000153464 Rapgef3-010 processed_transcript Mus_musculus 0 553
ENSMUST00000153241 Rapgef3-012 processed_transcript Mus_musculus 0 446
ENSMUST00000142196 Rapgef3-011 retained_intron Mus_musculus 0 353

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