C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000175896 Lhx2-006 ENSMUSG00000000247 10090 + 2:38353802-38360089 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderColonKidneyLungOvaryENSMUST00000175896
Transcript ID Adipose Bladder Colon Kidney Lung Ovary
ENSMUST00000175896 0.071±0.00 0.003±0.00 0.019±0.00 0.021±0.00 0.036±0.00 0.033±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WO CIL_0006WO_0002 CGP 2:37798991-38369733
CIL_000847 CIL_000847_0002 VISTA 2:37842558-38444874
CIL_0008FJ CIL_0008FJ_0002 VISTA 2:37895268-38499898
CIL_0007MV CIL_0007MV_0002 UCNEbase 2:38111928-38614796
CIL_0008N3 CIL_0008N3_0002 VISTA 2:38235055-38837083
CIL_00098L CIL_00098L_0002 VISTA 2:38294702-38895720
CIL_0006WH CIL_0006WH_0002 CGP 2:38339281-38588041

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367387 LHX9-004 protein_coding Homo_sapiens 3.00004e-41 176
ENST00000367390 LHX9-001 protein_coding Homo_sapiens 3.00004e-41 176
ENST00000367391 LHX9-003 protein_coding Homo_sapiens 6.00036e-42 176
ENST00000373615 LHX2-001 protein_coding Homo_sapiens 0 793
ENST00000446480 LHX2-002 protein_coding Homo_sapiens 0 832
ENST00000488674 LHX2-003 protein_coding Homo_sapiens 0 388
ENST00000560961 LHX2-004 protein_coding Homo_sapiens 0 385
ENST00000561173 LHX9-007 protein_coding Homo_sapiens 8.00001e-42 176

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