C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176731 Smarca2-006 ENSMUSG00000024921 10090 + 19:26751947-26778321 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverMuscleOvaryPlacentaENSMUST00000176731
Transcript ID Bladder Brain Breast Kidney Liver Muscle Ovary Placenta
ENSMUST00000176731 22.214±1.56 26.390±2.73 6.576±0.00 11.560±1.42 2.763±0.87 5.823±1.33 27.272±2.44 3.271±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0003 CGP 19:25672420-26778321
CIL_0007PU CIL_0007PU_0002 VISTA 19:26544388-27147098

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006325 TAS chromatin organization
GO:0006334 TAS nucleosome assembly
GO:0008285 IMP negative regulation of cell proliferation
GO:0016514 TAS SWI/SNF complex
GO:0035887 IMP aortic smooth muscle cell differentiation
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302401 SMARCA2-001 protein_coding Homo_sapiens 0 669
ENST00000324954 SMARCA2-201 protein_coding Homo_sapiens 0 669
ENST00000349721 SMARCA2-202 protein_coding Homo_sapiens 0 669
ENST00000357248 SMARCA2-203 protein_coding Homo_sapiens 0 669
ENST00000382183 SMARCA2-013 protein_coding Homo_sapiens 0 568
ENST00000382185 SMARCA2-009 protein_coding Homo_sapiens 0 621
ENST00000382194 SMARCA2-004 protein_coding Homo_sapiens 0 627
ENST00000382203 SMARCA2-003 protein_coding Homo_sapiens 0 669

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