C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382183 SMARCA2-013 ENSG00000080503 9606 + 9:2158513-2193040 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastOvaryTestisENST00000382183
Transcript ID Adipose Adrenal Brain Breast Ovary Testis
ENST00000382183 11.091±0.00 11.601±0.00 27.048±0.00 17.965±0.00 66.797±0.00 25.129±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0002 CGP 9:1050354-2193624
CIL_0007PU CIL_0007PU_0001 VISTA 9:1940936-2542833

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177252 Smarca2-016 protein_coding Mus_musculus 0 1064
ENSMUST00000112637 Smarca2-007 protein_coding Mus_musculus 0 1042
ENSMUST00000025862 Smarca2-001 protein_coding Mus_musculus 0 1040
ENSMUST00000176475 Smarca2-009 protein_coding Mus_musculus 0 948
ENSMUST00000176769 Smarca2-005 protein_coding Mus_musculus 0 944
ENSMUST00000176030 Smarca2-003 protein_coding Mus_musculus 0 745
ENSMUST00000177116 Smarca2-018 protein_coding Mus_musculus 0 743
ENSMUST00000175791 Smarca2-010 protein_coding Mus_musculus 0 660
ENSMUST00000176698 Smarca2-011 protein_coding Mus_musculus 0 649
ENSMUST00000177484 Smarca2-014 protein_coding Mus_musculus 0 647
ENSMUST00000176700 Smarca2-019 retained_intron Mus_musculus 0 595
ENSMUST00000176731 Smarca2-006 nonsense_mediated_decay Mus_musculus 0 568
ENSMUST00000099537 Smarca2-002 nonsense_mediated_decay Mus_musculus 0 568
ENSMUST00000175842 Smarca2-015 protein_coding Mus_musculus 0 479
ENSMUST00000175953 Smarca2-017 protein_coding Mus_musculus 0 398
ENSMUST00000176494 Smarca2-008 processed_transcript Mus_musculus 0 211
ENSMUST00000175935 Smarca2-004 processed_transcript Mus_musculus 1e-37 161

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