C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409909 LSM5-007 ENSG00000106355 9606 - 7:32486805-32495283 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000409909
Transcript ID Adipose Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000409909 1.730±0.00 0.492±0.00 2.983±0.00 1.435±0.73 4.265±0.00 2.335±0.00 1.423±0.00 0.770±0.00 6.535±2.32 5.873±0.24 4.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000359 CIL_000359_0001 CGP 7:31751179-32495283
CIL_0003FD CIL_0003FD_0001 CGP 7:32485332-32588721

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005681 IEA spliceosomal complex
GO:0005829 TAS cytosol
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170382 Lsm5-001 protein_coding Mus_musculus 0 335
ENSMUST00000145844 Gm7846-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000174543 Gm10074-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000175865 Lsm5-004 retained_intron Mus_musculus 1.4013e-45 187
ENSMUST00000120640 Gm11792-001 processed_pseudogene Mus_musculus 2.00386e-43 180
ENSMUST00000176595 Lsm5-002 processed_transcript Mus_musculus 4.00001e-40 169
ENSMUST00000177144 Lsm5-003 nonsense_mediated_decay Mus_musculus 7e-38 161

Loading