C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409292 LSM5-005 ENSG00000106355 9606 - 7:32487029-32490100 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000409292
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000409292 3.147±0.00 9.990±0.00 11.292±0.00 13.022±0.00 6.141±0.00 5.126±3.73 5.903±0.00 2.437±1.06 14.029±1.28 5.620±2.37 6.196±3.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000359 CIL_000359_0001 CGP 7:31751179-32495283
CIL_0003FD CIL_0003FD_0001 CGP 7:32485332-32588721

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005681 IEA spliceosomal complex
GO:0005829 TAS cytosol
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170382 Lsm5-001 protein_coding Mus_musculus 0 337
ENSMUST00000145844 Gm7846-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000174543 Gm10074-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000175865 Lsm5-004 retained_intron Mus_musculus 1.4013e-45 187
ENSMUST00000120640 Gm11792-001 processed_pseudogene Mus_musculus 9.94922e-44 180
ENSMUST00000176595 Lsm5-002 processed_transcript Mus_musculus 8.99998e-41 171
ENSMUST00000177144 Lsm5-003 nonsense_mediated_decay Mus_musculus 5e-38 161

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