C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain GRB2-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177883 Sh3gl3-005 ENSMUSG00000030638 10090 + 7:82174856-82307419 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000177883
Transcript ID Adrenal Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000177883 0.817±0.36 0.270±0.16 0.870±0.00 0.314±0.17 0.079±0.02 0.030±0.00 0.036±0.00 0.468±0.34 0.569±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KR CIL_0006KR_0002 CGP 7:81966672-82307419
CIL_0007U9 CIL_0007U9_0002 VISTA 7:82082717-82683985
CIL_000406 CIL_000406_0002 CGP 7:82173840-82614450

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006897 IEA endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324537 SH3GL3-001 protein_coding Homo_sapiens 0 911
ENST00000427482 SH3GL3-002 protein_coding Homo_sapiens 0 911
ENST00000467735 SH3GL3-004 processed_transcript Homo_sapiens 0 294
ENST00000492099 SH3GL3-003 retained_intron Homo_sapiens 0 272
ENST00000563901 SH3GL3-005 nonsense_mediated_decay Homo_sapiens 0 911
ENST00000564054 SH3GL3-006 processed_transcript Homo_sapiens 0 490

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