C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain GRB2-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177895 Sh3gl3-006 ENSMUSG00000030638 10090 + 7:82174950-82307419 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000177895
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000177895 0.202±0.02 6.658±0.39 11.267±8.33 0.259±0.10 0.460±0.00 0.288±0.00 0.257±0.06 0.050±0.01 0.219±0.00 0.114±0.05 0.786±0.21 0.400±0.16 23.924±15.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KR CIL_0006KR_0002 CGP 7:81966672-82307419
CIL_0007U9 CIL_0007U9_0002 VISTA 7:82082717-82683985
CIL_000406 CIL_000406_0002 CGP 7:82173840-82614450

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006897 IEA endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324537 SH3GL3-001 protein_coding Homo_sapiens 0 1325
ENST00000427482 SH3GL3-002 protein_coding Homo_sapiens 0 1399
ENST00000467735 SH3GL3-004 processed_transcript Homo_sapiens 0 294
ENST00000492099 SH3GL3-003 retained_intron Homo_sapiens 0 231
ENST00000563901 SH3GL3-005 nonsense_mediated_decay Homo_sapiens 0 1426
ENST00000564054 SH3GL3-006 processed_transcript Homo_sapiens 0 490

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