C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 27005
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182783 Gm27005-001 ENSMUSG00000098103 10090 + 16:25726696-25727616 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastTestisENSMUST00000182783
Transcript ID Breast Testis
ENSMUST00000182783 0.045±0.00 0.034±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003Y5 CIL_0003Y5_0003 CGP 16:25286817-25892102
CIL_000933 CIL_000933_0002 VISTA 16:25287855-25888485
CIL_0000DP CIL_0000DP_0002 CGP 16:25683763-26105784

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 333
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 329
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 333
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 333
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 333
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 211
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 3e-32 143
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 1e-17 95
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 233
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 255
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 204
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 329
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 329
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 209
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 196
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 3e-28 130
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 1e-17 95
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 300
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 274
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 254
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 331

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