C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12117
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183831 Gm12117-002 ENSMUSG00000098456 10090 - 11:33275879-33276334 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverPlacentaTestisENSMUST00000183831
Transcript ID Adipose Adrenal Brain Breast Heart Liver Placenta Testis
ENSMUST00000183831 0.091±0.00 0.229±0.08 0.201±0.00 0.114±0.00 0.082±0.00 0.021±0.00 0.082±0.00 0.111±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092S CIL_00092S_0002 VISTA 11:32891798-33493112
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607
CIL_00088M CIL_00088M_0002 VISTA 11:33042866-33643782
CIL_000977 CIL_000977_0002 VISTA 11:33092412-33693558
CIL_00098H CIL_00098H_0002 VISTA 11:33099828-33701076
CIL_0008SG CIL_0008SG_0002 VISTA 11:33129906-33731024
CIL_0007NP CIL_0007NP_0002 UCNEbase 11:33192157-33430428

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016620 IEA oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 418
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 418
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 418
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 418
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 418
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 329
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 268
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 296
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 364
ENST00000434621 GAPDHP68-001 processed_pseudogene Homo_sapiens 0 357
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 2e-39 167
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 283
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 418
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 418
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 351
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 307
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 418

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