C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal transducer and activator of transcription 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186857 Stat1-006 ENSMUSG00000026104 10090 + 1:52119492-52161007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000186857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000186857 15.913±0.96 12.288±1.37 17.768±3.64 1.499±0.58 21.917±2.78 3.706±1.15 5.806±0.31 8.203±1.07 6.921±2.12 14.219±1.47 2.504±0.76 10.669±3.24 7.128±2.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AM CIL_0009AM_0002 VISTA 1:51779533-52380137
CIL_0002AL CIL_0002AL_0002 CGP 1:51987148-52161865
CIL_0002SJ CIL_0002SJ_0003 CGP 1:52119440-52233232

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005509 IEA calcium ion binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IMP transcription, DNA-templated
GO:0009617 IDA response to bacterium
GO:0019221 IDA cytokine-mediated signaling pathway
GO:0031663 IDA lipopolysaccharide-mediated signaling pathway
GO:0032496 IDA response to lipopolysaccharide
GO:0034240 IMP negative regulation of macrophage fusion
GO:0043330 IDA response to exogenous dsRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264657 STAT3-001 protein_coding Homo_sapiens 4e-28 132
ENST00000361099 STAT1-001 protein_coding Homo_sapiens 0 2627
ENST00000389272 STAT3-013 protein_coding Homo_sapiens 2e-28 132
ENST00000392322 STAT1-003 protein_coding Homo_sapiens 0 2359
ENST00000392323 STAT1-002 protein_coding Homo_sapiens 0 2357
ENST00000404395 STAT3-002 protein_coding Homo_sapiens 2e-28 132
ENST00000409465 STAT1-011 protein_coding Homo_sapiens 0 2627
ENST00000415035 STAT1-010 nonsense_mediated_decay Homo_sapiens 0 261
ENST00000423282 STAT1-005 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000452281 STAT1-006 nonsense_mediated_decay Homo_sapiens 0 1637
ENST00000464072 STAT1-009 retained_intron Homo_sapiens 0 549
ENST00000540176 STAT1-201 protein_coding Homo_sapiens 0 1905
ENST00000585517 STAT3-012 protein_coding Homo_sapiens 3e-28 132
ENST00000588969 STAT3-011 protein_coding Homo_sapiens 2e-28 132

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