C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PTPRF interacting protein, binding protein 1 (liprin beta 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000228425 PPFIBP1-001 ENSG00000110841 9606 + 12:27524256-27695564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228425
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228425 4.393±0.00 2.199±0.00 1.593±0.00 1.422±0.00 4.746±0.00 1.754±0.60 6.495±3.65 2.346±1.33 2.405±0.56 5.080±1.88 0.774±0.02 4.527±1.91 3.701±0.33 1.414±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056H CIL_00056H_0001 CGP 12:27466810-27695564

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 NAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 TAS cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000123902 Ppfibp1-004 retained_intron Mus_musculus 0 1720
ENSMUST00000111623 Ppfibp1-002 protein_coding Mus_musculus 0 1720
ENSMUST00000016631 Ppfibp1-001 protein_coding Mus_musculus 0 1720
ENSMUST00000136837 Ppfibp1-010 protein_coding Mus_musculus 0 486
ENSMUST00000155415 Ppfibp1-009 protein_coding Mus_musculus 0 357
ENSMUST00000149203 Ppfibp1-005 retained_intron Mus_musculus 2e-32 147
ENSMUST00000140795 Abat-002 retained_intron Mus_musculus 0.00003 57
ENSMUST00000159255 Mettl13-002 retained_intron Mus_musculus 0.0004 53

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