C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spastic paraplegia 11 (autosomal recessive)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261866 SPG11-001 ENSG00000104133 9606 - 15:44562696-44663664 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261866
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261866 3.640±0.00 3.336±0.00 2.048±0.56 2.509±0.71 3.594±1.37 4.734±0.00 2.836±0.91 2.628±1.22 5.366±2.70 3.717±0.00 4.003±1.10 3.742±2.09 4.975±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000686 CIL_000686_0001 CGP 15:44427234-44563029
CIL_0004DI CIL_0004DI_0001 CGP 15:44537057-44663678
CIL_0004DJ CIL_0004DJ_0001 CGP 15:44562696-44711316

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005765 IDA lysosomal membrane
GO:0005886 IDA plasma membrane
GO:0008219 IEA cell death
GO:0016021 IEA integral component of membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036450 Spg11-001 protein_coding Mus_musculus 0 5633
ENSMUST00000180600 Gm3650-001 unprocessed_pseudogene Mus_musculus 0 915
ENSMUST00000028668 Eif3j1-001 protein_coding Mus_musculus 0 224

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