C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spastic paraplegia 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036450 Spg11-001 ENSMUSG00000033396 10090 - 2:122053520-122118386 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036450
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036450 4.914±0.67 3.478±1.27 3.340±0.63 4.557±1.64 3.216±0.61 4.356±1.53 1.786±0.26 2.862±0.66 2.290±0.34 5.211±0.41 1.578±0.07 5.710±1.40 4.921±0.28 3.437±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000686 CIL_000686_0002 CGP 2:121956001-122056598
CIL_0004DI CIL_0004DI_0002 CGP 2:122028546-122118386
CIL_0004DJ CIL_0004DJ_0002 CGP 2:122053520-122186189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005765 IEA lysosomal membrane
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261866 SPG11-001 protein_coding Homo_sapiens 0 5633
ENST00000427534 SPG11-004 protein_coding Homo_sapiens 0 4933
ENST00000535302 SPG11-002 protein_coding Homo_sapiens 0 4036
ENST00000558138 SPG11-019 protein_coding Homo_sapiens 0 588
ENST00000558155 SPG11-013 nonsense_mediated_decay Homo_sapiens 0 228
ENST00000558319 SPG11-006 protein_coding Homo_sapiens 0 4327
ENST00000559347 SPG11-027 processed_transcript Homo_sapiens 0 623
ENST00000559511 SPG11-007 protein_coding Homo_sapiens 0 1158
ENST00000559933 SPG11-017 retained_intron Homo_sapiens 0 503
ENST00000560299 SPG11-020 retained_intron Homo_sapiens 0 357
ENST00000560858 SPG11-025 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000561268 SPG11-018 retained_intron Homo_sapiens 0 315

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