C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 3, subunit J1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028668 Eif3j1-001 ENSMUSG00000027236 10090 + 2:122028546-122056598 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028668
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028668 1.865±0.04 6.995±2.20 3.549±1.35 3.224±2.49 2.454±1.07 2.720±0.11 2.140±0.39 1.429±0.52 6.552±5.80 2.419±0.58 13.245±2.29 5.164±1.35 9.312±3.45 3.020±2.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000686 CIL_000686_0002 CGP 2:121956001-122056598
CIL_0004DI CIL_0004DI_0002 CGP 2:122028546-122118386

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0003743 IEA translation initiation factor activity
GO:0005852 IEA eukaryotic translation initiation factor 3 complex
GO:0006446 IEA regulation of translational initiation
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0033290 IEA eukaryotic 48S preinitiation complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261866 SPG11-001 protein_coding Homo_sapiens 0 224
ENST00000261868 EIF3J-001 protein_coding Homo_sapiens 0 2440
ENST00000424492 EIF3J-003 protein_coding Homo_sapiens 0 1725
ENST00000425861 RP11-65B23.3-001 processed_pseudogene Homo_sapiens 0 593
ENST00000427534 SPG11-004 protein_coding Homo_sapiens 0 224
ENST00000448435 RP4-581F12.1-001 processed_pseudogene Homo_sapiens 0 326
ENST00000451571 RP11-159H20.3-001 processed_pseudogene Homo_sapiens 0 599
ENST00000466044 RP11-63E16.1-001 processed_pseudogene Homo_sapiens 0 854
ENST00000535302 SPG11-002 protein_coding Homo_sapiens 0 224
ENST00000535391 EIF3J-002 protein_coding Homo_sapiens 0 712
ENST00000536248 EIF3J-004 protein_coding Homo_sapiens 0 446
ENST00000558053 EIF3J-006 retained_intron Homo_sapiens 0 569
ENST00000558138 SPG11-019 protein_coding Homo_sapiens 0 224
ENST00000558353 EIF3J-007 nonsense_mediated_decay Homo_sapiens 0 1349
ENST00000559347 SPG11-027 processed_transcript Homo_sapiens 0 224
ENST00000559511 SPG11-007 protein_coding Homo_sapiens 0 224
ENST00000561268 SPG11-018 retained_intron Homo_sapiens 0 231

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