C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligase III, DNA, ATP-dependent
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262327 LIG3-002 ENSG00000005156 9606 + 17:34980546-35003172 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartLiverLungMuscleOvaryPlacentaENST00000262327
Transcript ID Bladder Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000262327 2.021±0.00 3.680±0.00 2.051±0.99 2.302±0.00 4.255±0.00 5.587±0.00 7.076±1.35 6.259±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055V CIL_00055V_0001 CGP 17:34580749-34981078
CIL_000745 CIL_000745_0001 CGP 17:34927859-34981078
CIL_00055Q CIL_00055Q_0001 CGP 17:34961530-35009743
CIL_00055O CIL_00055O_0001 CGP 17:34980494-35089319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003909 IDA DNA ligase activity
GO:0003910 IEA:IBA DNA ligase (ATP) activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 IBA chromosome
GO:0006273 IBA lagging strand elongation
GO:0006281 TAS:IEA DNA repair
GO:0006284 TAS base-excision repair
GO:0006289 IBA nucleotide-excision repair
GO:0006310 IEA DNA recombination
GO:0007131 TAS reciprocal meiotic recombination
GO:0007283 TAS spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0071897 IEA DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080461 Lig3-002 protein_coding Mus_musculus 0 3326
ENSMUST00000173727 Lig3-011 protein_coding Mus_musculus 0 3284
ENSMUST00000092849 Lig3-001 protein_coding Mus_musculus 0 3275
ENSMUST00000173347 Lig3-007 protein_coding Mus_musculus 0 3273
ENSMUST00000173722 Lig3-009 protein_coding Mus_musculus 0 3264
ENSMUST00000021039 Lig3-201 protein_coding Mus_musculus 0 3225
ENSMUST00000172609 Lig3-010 retained_intron Mus_musculus 0 2368
ENSMUST00000173009 Lig3-006 protein_coding Mus_musculus 0 1471
ENSMUST00000131537 Lig3-008 protein_coding Mus_musculus 0 1459
ENSMUST00000155818 Lig3-005 retained_intron Mus_musculus 0 839

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