C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligase III, DNA, ATP-dependent
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173347 Lig3-007 ENSMUSG00000020697 10090 + 11:82781193-82802025 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000173347
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000173347 2.842±0.00 3.900±0.38 3.101±0.00 4.294±0.52 1.563±0.32 2.822±0.76 3.217±0.01 2.182±0.07 2.020±0.33 5.234±1.62 7.311±2.73 16.367±2.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055Q CIL_00055Q_0002 CGP 11:82764345-82804274
CIL_00055O CIL_00055O_0002 CGP 11:82781108-82871210

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000794 IDA condensed nuclear chromosome
GO:0000795 IDA synaptonemal complex
GO:0003677 IEA DNA binding
GO:0003910 IBA DNA ligase (ATP) activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IBA nucleus
GO:0005694 IBA chromosome
GO:0006266 IBA DNA ligation
GO:0006273 IBA lagging strand elongation
GO:0006289 IBA nucleotide-excision repair
GO:0006303 IMP double-strand break repair via nonhomologous end joining
GO:0006310 IEA DNA recombination
GO:0008270 IEA zinc ion binding
GO:0043504 IMP mitochondrial DNA repair
GO:0045910 IMP negative regulation of DNA recombination
GO:0051103 IEA DNA ligation involved in DNA repair
GO:0071897 IEA DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262327 LIG3-002 protein_coding Homo_sapiens 0 3273
ENST00000378526 LIG3-001 protein_coding Homo_sapiens 0 3555
ENST00000585370 LIG3-015 nonsense_mediated_decay Homo_sapiens 0 217
ENST00000585740 LIG3-007 protein_coding Homo_sapiens 0 1007
ENST00000585941 LIG3-005 protein_coding Homo_sapiens 0 1919
ENST00000586058 LIG3-012 retained_intron Homo_sapiens 0 712
ENST00000586119 LIG3-014 retained_intron Homo_sapiens 0 730
ENST00000586435 LIG3-010 retained_intron Homo_sapiens 0 418
ENST00000588109 LIG3-009 nonsense_mediated_decay Homo_sapiens 6e-33 145
ENST00000588713 LIG3-013 retained_intron Homo_sapiens 0 407
ENST00000590181 LIG3-004 retained_intron Homo_sapiens 0 946
ENST00000590630 LIG3-011 retained_intron Homo_sapiens 0 1227
ENST00000592244 LIG3-016 retained_intron Homo_sapiens 3e-29 132
ENST00000592690 LIG3-006 protein_coding Homo_sapiens 0 806
ENST00000593099 LIG3-003 retained_intron Homo_sapiens 0 291

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