C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021548 Rdh12-001 ENSMUSG00000021123 10090 + 12:79208914-79222665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021548
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021548 0.327±0.06 0.065±0.01 2.613±0.52 0.423±0.15 1.029±0.63 0.330±0.17 0.215±0.00 0.217±0.15 0.655±0.64 2.284±1.84 0.124±0.08 0.393±0.21 5.855±2.13 0.135±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CM CIL_0002CM_0002 CGP 12:79174337-79222665
CIL_00083I CIL_00083I_0002 VISTA 12:79205602-79809359
CIL_0001JS CIL_0001JS_0003 CGP 12:79208914-79296282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004745 ISS retinol dehydrogenase activity
GO:0005515 IEA protein binding
GO:0005622 ISS intracellular
GO:0007601 IEA visual perception
GO:0042572 ISS retinol metabolic process
GO:0050896 IEA response to stimulus
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267502 RDH12-201 protein_coding Homo_sapiens 0 928
ENST00000381346 RDH11-001 protein_coding Homo_sapiens 0 263
ENST00000428130 RDH11-004 protein_coding Homo_sapiens 0 241
ENST00000551171 RDH12-001 protein_coding Homo_sapiens 0 928
ENST00000553384 RDH11-003 protein_coding Homo_sapiens 0 195
ENST00000553578 RDH11-006 retained_intron Homo_sapiens 7e-25 121
ENST00000553816 RDH11-012 retained_intron Homo_sapiens 0 241
ENST00000554035 RDH11-013 protein_coding Homo_sapiens 3e-37 159
ENST00000557331 RDH11-008 nonsense_mediated_decay Homo_sapiens 9.80909e-45 183
ENST00000557726 RDH11-010 protein_coding Homo_sapiens 3e-31 139

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