C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151980 Rdh12-002 ENSMUSG00000021123 10090 + 12:79208947-79222664 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000151980
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000151980 0.155±0.07 0.636±0.03 0.093±0.00 0.636±0.22 0.089±0.01 0.081±0.01 0.104±0.07 0.129±0.15 0.592±0.52 0.061±0.02 0.194±0.10 0.063±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CM CIL_0002CM_0002 CGP 12:79174337-79222665
CIL_00083I CIL_00083I_0002 VISTA 12:79205602-79809359
CIL_0001JS CIL_0001JS_0003 CGP 12:79208914-79296282

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267502 RDH12-201 protein_coding Homo_sapiens 0 377
ENST00000381346 RDH11-001 protein_coding Homo_sapiens 5e-30 137
ENST00000428130 RDH11-004 protein_coding Homo_sapiens 9e-24 115
ENST00000551171 RDH12-001 protein_coding Homo_sapiens 0 377
ENST00000553384 RDH11-003 protein_coding Homo_sapiens 3e-30 137
ENST00000553578 RDH11-006 retained_intron Homo_sapiens 3e-24 119
ENST00000553816 RDH11-012 retained_intron Homo_sapiens 9e-24 115
ENST00000554035 RDH11-013 protein_coding Homo_sapiens 1e-30 137
ENST00000557331 RDH11-008 nonsense_mediated_decay Homo_sapiens 2e-27 126
ENST00000557726 RDH11-010 protein_coding Homo_sapiens 3e-31 139

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