C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, N type, alpha 1B subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000277551 CACNA1B-002 ENSG00000148408 9606 + 9:137877789-138122179 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000277551
Transcript ID Brain
ENST00000277551 1.058±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005245 TAS voltage-gated calcium channel activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005886 IBA plasma membrane
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007268 IBA synaptic transmission
GO:0008022 IPI protein C-terminus binding
GO:0008331 IBA high voltage-gated calcium channel activity
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0051899 TAS membrane depolarization
GO:0055085 IEA transmembrane transport
GO:0070509 IBA calcium ion import
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102939 Cacna1b-004 protein_coding Mus_musculus 0 3956
ENSMUST00000100348 Cacna1b-201 protein_coding Mus_musculus 0 3873
ENSMUST00000114447 Cacna1b-003 protein_coding Mus_musculus 0 3873
ENSMUST00000041342 Cacna1b-002 protein_coding Mus_musculus 0 3873
ENSMUST00000070864 Cacna1b-001 protein_coding Mus_musculus 0 3253
ENSMUST00000121390 Cacna1a-001 protein_coding Mus_musculus 0 1190
ENSDART00000138765 cacna1aa-002 protein_coding Danio_rerio 0 1134
ENSDART00000144774 cacna1aa-001 protein_coding Danio_rerio 0 1134
ENSDART00000089967 cacna1bb-201 protein_coding Danio_rerio 0 1118
ENSDART00000013228 cacna1aa-201 protein_coding Danio_rerio 0 1103
ENSMUST00000125798 Cacna1b-008 processed_transcript Mus_musculus 0 721
ENSDART00000141154 cacna1ba-002 protein_coding Danio_rerio 0 621
ENSDART00000047719 cacna1ba-001 protein_coding Danio_rerio 0 621
ENSMUST00000135382 Cacna1a-003 retained_intron Mus_musculus 0 508
ENSMUST00000133892 Cacna1b-009 protein_coding Mus_musculus 0 477
ENSMUST00000155356 Cacna1b-007 protein_coding Mus_musculus 0 303
ENSDART00000132142 cacna1bb-001 protein_coding Danio_rerio 0 272
ENSMUST00000124183 Cacna1b-005 protein_coding Mus_musculus 4e-39 169

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