C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 16580
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162696 Gm16580-001 ENSMUSG00000089764 10090 + 17:26269336-26270379 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162696
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162696 2.348±0.25 0.763±0.30 2.629±2.22 0.781±0.63 2.105±0.54 1.196±0.26 0.419±0.18 0.822±0.33 1.204±1.27 0.873±0.14 0.123±0.06 2.577±2.00 0.377±0.33 3.519±1.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0002 VISTA 17:26208852-26810691
CIL_0002RY CIL_0002RY_0002 CGP 17:26211822-26285504

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281589 PABPC3-001 protein_coding Homo_sapiens 0 1229
ENST00000318607 PABPC1-001 protein_coding Homo_sapiens 0 1491
ENST00000403786 AC019129.1-001 processed_pseudogene Homo_sapiens 0 327
ENST00000469174 PABPC1P3-001 processed_pseudogene Homo_sapiens 0 531
ENST00000506347 PABPC1P1-001 processed_pseudogene Homo_sapiens 0 754
ENST00000517403 PABPC1-007 protein_coding Homo_sapiens 0 693
ENST00000517990 PABPC1-025 protein_coding Homo_sapiens 0 279
ENST00000518293 PABPC1-021 protein_coding Homo_sapiens 0 191
ENST00000518716 PABPC1-022 retained_intron Homo_sapiens 0 909
ENST00000519004 PABPC1-002 protein_coding Homo_sapiens 0 1491
ENST00000519100 PABPC1-012 protein_coding Homo_sapiens 0 564
ENST00000519596 PABPC1-013 processed_transcript Homo_sapiens 0 564
ENST00000519622 PABPC1-024 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000519848 PABPC1-023 retained_intron Homo_sapiens 0 625
ENST00000520868 PABPC1-006 protein_coding Homo_sapiens 0 665
ENST00000522387 PABPC1-003 protein_coding Homo_sapiens 0 1491
ENST00000522658 PABPC1-005 protein_coding Homo_sapiens 0 739
ENST00000523636 PABPC1-014 nonsense_mediated_decay Homo_sapiens 0 632
ENST00000539977 PABPC1P4-001 processed_pseudogene Homo_sapiens 0 1184
ENST00000610907 PABPC1-201 protein_coding Homo_sapiens 0 723

Loading