C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: musashi RNA-binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107909 Msi2-001 ENSMUSG00000069769 10090 - 11:88339382-88718229 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107909 5.542±2.15 9.466±5.17 16.579±1.31 20.375±9.94 4.806±1.53 10.528±2.81 4.240±0.00 9.164±2.16 2.559±1.18 13.191±2.08 8.973±3.81 19.936±6.89 1.707±0.52 3.233±2.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DL CIL_0009DL_0002 VISTA 11:87880548-88481652
CIL_0009DM CIL_0009DM_0002 VISTA 11:87974079-88576075
CIL_0007PL CIL_0007PL_0002 UCNEbase 11:88049942-88585488
CIL_0007R8 CIL_0007R8_0002 VISTA 11:88167358-88768721
CIL_0008GV CIL_0008GV_0002 VISTA 11:88227850-88829479
CIL_000880 CIL_000880_0002 VISTA 11:88254791-88855816
CIL_00039S CIL_00039S_0002 CGP 11:88339382-88864586

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003727 IDA single-stranded RNA binding
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0008266 IDA poly(U) RNA binding
GO:0048864 IMP stem cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000050649 msi2b-005 protein_coding Danio_rerio 0 771
ENSDART00000100194 msi2b-001 protein_coding Danio_rerio 0 682
ENSDART00000099473 msi2a-201 protein_coding Danio_rerio 0 621
ENSDART00000132096 msi2a-001 protein_coding Danio_rerio 0 621
ENSDART00000152414 msi2b-011 protein_coding Danio_rerio 0 568
ENSDART00000145918 msi2b-015 protein_coding Danio_rerio 0 551
ENSDART00000156160 msi2b-008 protein_coding Danio_rerio 0 518
ENSDART00000141183 msi2a-003 retained_intron Danio_rerio 0 351
ENSDART00000135642 msi2a-002 retained_intron Danio_rerio 0 348
ENSDART00000154714 msi2b-004 protein_coding Danio_rerio 0 327
ENSDART00000134104 msi2a-004 retained_intron Danio_rerio 0 326
ENSDART00000156914 msi2b-003 protein_coding Danio_rerio 0 311
ENST00000284073 MSI2-001 protein_coding Homo_sapiens 0 4440
ENST00000322684 MSI2-003 protein_coding Homo_sapiens 0 1064
ENST00000416426 MSI2-002 protein_coding Homo_sapiens 0 1123
ENST00000442934 MSI2-005 protein_coding Homo_sapiens 0 1753
ENST00000577241 MSI2-015 retained_intron Homo_sapiens 0 287
ENST00000579180 MSI2-006 protein_coding Homo_sapiens 0 627
ENST00000579205 MSI2-011 processed_transcript Homo_sapiens 0 435
ENST00000579466 MSI2-017 processed_transcript Homo_sapiens 1e-39 165
ENST00000579483 MSI2-004 retained_intron Homo_sapiens 0.0000000009 71
ENST00000579505 MSI2-013 processed_transcript Homo_sapiens 0 555
ENST00000579531 MSI2-019 processed_transcript Homo_sapiens 0 442
ENST00000579590 MSI2-009 protein_coding Homo_sapiens 0 579
ENST00000581523 MSI2-018 processed_transcript Homo_sapiens 0 549
ENST00000581776 MSI2-008 nonsense_mediated_decay Homo_sapiens 0 484
ENST00000582453 MSI2-014 processed_transcript Homo_sapiens 0 691
ENST00000582772 MSI2-012 processed_transcript Homo_sapiens 0 204
ENST00000584476 MSI2-010 retained_intron Homo_sapiens 0 392

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