C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhophilin, Rho GTPase binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000289013 RHPN1-001 ENSG00000158106 9606 + 8:143368887-143384220 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonKidneyLiverMuscleOvaryPlacentaTestisENST00000289013
Transcript ID Adipose Adrenal Bladder Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000289013 0.496±0.00 0.578±0.00 0.287±0.00 0.320±0.00 1.593±0.00 0.202±0.13 0.037±0.00 1.088±0.81 0.671±0.02 0.349±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0001 VISTA 8:143231340-143832399
CIL_0001NH CIL_0001NH_0001 CGP 8:143304384-143384220
CIL_0001NI CIL_0001NI_0001 CGP 8:143368855-143430406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 IEA small GTPase regulator activity
GO:0005515 IEA protein binding
GO:0007165 IEA signal transduction
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121137 Rhpn1-001 protein_coding Mus_musculus 0 1352
ENSMUST00000023244 Rhpn1-002 protein_coding Mus_musculus 0 1072
ENSMUST00000149407 Rhpn1-005 nonsense_mediated_decay Mus_musculus 0 869
ENSMUST00000124749 Rhpn1-003 retained_intron Mus_musculus 0 809
ENSMUST00000143056 Rhpn1-004 retained_intron Mus_musculus 0 420

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